FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925428

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925428
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences439912
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG59191.345496372001673No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC21690.4930531560857626No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG19770.4494080634308679No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG13650.31028933059339137No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13420.3050610122024405No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13310.30256051210242046No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12680.2882394660750332No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC9600.2182254632744731No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8630.19617559875611487No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7950.180717961774173No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7330.16662423393769663No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6720.15275782429213114No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT6480.14730218771026934No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT6360.1445743694193384No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6010.1366182327374566No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5560.12638891414646566No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC5480.12457036861917839No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5250.11934205022822747No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5140.11684155012820746No Hit
GACGCTACCAACGCTACGACTACGTCCAGCT4980.1132044590736329No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4820.10956736801905836No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)