FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007925429

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925429
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences475481
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT20250.4258845253543254No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC18050.37961558926644806No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT14460.3041130981048665No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA13890.2921252373911892No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA13110.2757207964145781No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8430.17729415055491177No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8320.1749807037505179No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC8000.1682506766831903No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT7550.15878657611976082No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7520.15815563608219887No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT7370.15500093589438904No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6660.1400686883387559No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6590.138596494917778No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT6420.1350211680382602No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5650.11882704040750314No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5510.1158826535655473No Hit
CGCGGAGCTAGACGCAGTTGCAGCCTGGCTGGTGGTTTTAGTGG5270.1108351332650516No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC5160.10852168646065773No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG4890.10284322612260006No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA4810.10116071935576817No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)