FastQCFastQC Report
Wed 31 May 2023
EGAF00007925432

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925432
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences441855
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG57991.3124214957395526No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18310.41438933586810156No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18280.4137103801020696No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16150.36550452071380884No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14800.33495151124237593No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11820.26750857181654614No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10090.22835545597537651No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9410.21296579194532142No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7710.17449163187018366No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC7590.17177580880605628No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5640.12764368401398649No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5610.12696472824795466No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5400.12221203788573175No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5400.12221203788573175No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5350.12108044494234534No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4750.10750132962170848No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4750.10750132962170848No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4700.10636973667832207No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG4620.10455918796890382No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)