FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925433

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925433
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences468995
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA32470.6923314747491978No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA27890.5946758494227018No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12590.26844635870318445No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA10190.21727310525698568No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG9690.2066120107890276No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA9040.1927525879806821No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9030.19253936609132294No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7300.15565197923218796No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7160.1526668727811597No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC6980.1488288787726948No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6900.14712310365782152No Hit
AACCAGTTCCGGAGTCGGCGGACGCGGCGGGCGCTGCAGGATTT6820.14541732854294823No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6530.13923389375153253No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6480.13816778430473672No Hit
GCTGACAACCAGCTCGTCTTCGCCGTTCGGCGGTGGAGGCGGAA6210.13241079329203936No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6180.13177112762396187No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT5910.1260141366112645No Hit
ATCCGCGCATTCGCGGGTCAGGATGCCCTCTGCACCGATGGCCG5720.12196292071344043No Hit
GATTTCCGGGGTTTTGACAGAACGCAGCAGGTCAGCGATGGCCG5580.11897781426241218No Hit
ATGACGGGTCAGTTCGTCAGAACGGGAGAAACGACGATCGCAAC5340.1138604889177923No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG4750.10128039744560177No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)