FastQCFastQC Report
Wed 31 May 2023
EGAF00007925434

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925434
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences468995
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT63661.3573705476604228No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG26750.5703685540357573No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15970.3405153573065811No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10890.232198637512127No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10040.21407477691659826No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9840.20981033912941505No Hit
GCCGTCGCGAACAGCAACAACGACACCGCTA9810.20917067346133753No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG9670.2061855670103093No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8180.17441550549579418No Hit
CTGTCCTCCATGGCTATCACCTTCAAACGCG7730.16482052047463194No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7580.1616221921342445No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7490.15970319513001205No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7060.1505346538875681No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6510.13880744997281422No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6280.13390334651755348No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA6200.1321975714026802No Hit
GGCTCTTTCCCGGCAATGATTACCCCAGCGT5730.12217614260279962No Hit
GCTGCCGCGTACAACCCGCACCACCTGCCTC5550.1183381485943347No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5090.10852994168381326No Hit
TGCGAATGGGAACAAACCGAAGATAGCGGTC5040.10746383223701746No Hit
GCACCAACCTGCAACATCAAAGTAACCGTTT4920.10490516956470752No Hit

[OK]Adapter Content

Adapter graph