FastQCFastQC Report
Wed 8 May 2024
EGAF00007925436

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925436
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences436203
Total Bases13.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT61141.4016409790854258No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG58701.345703720515448No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15430.3537343851371953No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11360.26042920383399476No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9010.20655520480143422No Hit
GCCGTCGCGAACAGCAACAACGACACCGCTA8880.2035749410251649No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG8630.1978436645323393No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8580.19669740923377418No Hit
CTGTCCTCCATGGCTATCACCTTCAAACGCG7050.16162199709768157No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7000.16047574179911647No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6940.15910023544083832No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6750.15474446530629088No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6210.14236490808178762No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5840.13388261887240574No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5650.12952684873785827No Hit
GGCTCTTTCCCGGCAATGATTACCCCAGCGT5240.12012755528962432No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA5060.11600103621478991No Hit
GCTGCCGCGTACAACCCGCACCACCTGCCTC5010.11485478091622478No Hit
TGCGAATGGGAACAAACCGAAGATAGCGGTC4590.1052262364082778No Hit
GCACCAACCTGCAACATCAAAGTAACCGTTT4380.1004119641543043No Hit

[OK]Adapter Content

Adapter graph