FastQCFastQC Report
Wed 31 May 2023
EGAF00007925437

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925437
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences471845
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA31470.6669563098051267No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA28770.609734128792294No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC13170.27911708294037235No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11230.23800188621263338No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA9840.20854305969121215No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9740.20642371965369985No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG9370.19858216151490424No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC7500.1589505028134239No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7490.15873856880967266No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7330.15534762474965297No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6920.14665833059585245No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6600.13987644247581305No Hit
AACCAGTTCCGGAGTCGGCGGACGCGGCGGGCGCTGCAGGATTT6550.13881677245705687No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6270.1328826203520224No Hit
GCTGACAACCAGCTCGTCTTCGCCGTTCGGCGGTGGAGGCGGAA6180.13097521431826128No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT6030.1277962042619928No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5860.12419332619822186No Hit
ATCCGCGCATTCGCGGGTCAGGATGCCCTCTGCACCGATGGCCG5620.11910691010819231No Hit
GATTTCCGGGGTTTTGACAGAACGCAGCAGGTCAGCGATGGCCG5010.10617893587936716No Hit
ATGACGGGTCAGTTCGTCAGAACGGGAGAAACGACGATCGCAAC5000.10596700187561593No Hit
TTCCTGGCCTTCTTCACCCTCATCACCGTCACCACCTTCATCGC4820.10215218980809376No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)