FastQCFastQC Report
Sun 21 May 2023
EGAF00007925438

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925438
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences471845
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT68221.4458137735909038No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG27460.5819707743008826No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16960.35944007036208925No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12340.26152656062902013No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10640.2254977799913107No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC10260.2174442878487639No Hit
GCCGTCGCGAACAGCAACAACGACACCGCTA9640.20430437961618753No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG9230.195615085462387No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8230.17442168508726383No Hit
CTGTCCTCCATGGCTATCACCTTCAAACGCG8020.16997107100848793No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7860.16658012694846824No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7550.16001017283218008No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6500.1377571024383007No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6440.13648549841579333No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6260.13267068634827114No Hit
GGCTCTTTCCCGGCAATGATTACCCCAGCGT5700.12080238213820216No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA5510.11677563606692877No Hit
GCTGCCGCGTACAACCCGCACCACCTGCCTC5420.11486823003316766No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG4950.10490733185685977No Hit
GCACCAACCTGCAACATCAAAGTAACCGTTT4830.102364123811845No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4820.10215218980809376No Hit
TGCGAATGGGAACAAACCGAAGATAGCGGTC4810.10194025580434253No Hit

[OK]Adapter Content

Adapter graph