FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925439

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925439
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences481360
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG16700.3469336878843277No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10670.2216636197440585No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT9920.20608276549775634No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG9760.20275884992521193No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG9640.20026591324580353No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG9260.19237161376101047No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG8360.1736745886654479No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT8330.1730513544955958No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7500.15580854246302142No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6110.12693202592654146No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6020.1250623234169852No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA5870.12194615256772479No Hit
CTTTGGGTGTTTCTGTTTCTGACGCGCTTCGCTAGAGGTACGTT5200.10802725610769487No Hit
ACGGCGCCACGCGTTGCGCAGTTCACGGGTCGGTACGACAACAA4830.10034070134618582No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)