FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007925440

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925440
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences481360
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28990.6022519528003989No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG16420.34111683563237494No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15950.3313528336380256No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10980.2281037061658634No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC10270.21335383081269735No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA10250.2129383413661293No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC10230.21252285191956125No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC10170.21127638357985706No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC10160.21106863885657304No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8250.17138939670932357No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7870.16349509722453048No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6850.14230513544955958No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6510.1352418148579026No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5630.1169602792089081No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5510.11446734252949975No Hit
CCGCCGCGCACCCCTACCTGGGAATCCCCGG5360.11135117168023932No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5030.10449559581186638No Hit
GACGTTGGCCGTGCATGCGCAGGTTGTCGTG4910.10200265913245803No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)