FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007925441

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925441
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences466833
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT20530.4397718241855224No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA14410.30867569344926343No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA13440.28789738514629426No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT11400.24419867490087463No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA11090.23755818461848238No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT11010.23584450970689733No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6800.14566236748473224No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6440.13795083038259934No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA6160.13195296819205155No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5660.12124249999464476No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT5310.11374517225646003No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5300.11353096289251187No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT4960.10624784451827528No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG4680.10024998232772747No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)