FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925442

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925442
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences466833
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT28500.6104966872521865No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG27310.5850057729423583No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20880.4472691519237072No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11510.2465549779043041No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG11210.24012869698586004No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC11170.2392718595300675No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7110.15230285776712443No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6980.14951813603579867No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6180.1323813869199478No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG6170.1321671775559997No Hit
ATGGCATCCACCACCCCGATCACCATGGAAG5970.12788299027703698No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5690.12188512808648916No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC5550.11888619699121528No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA5110.10946098497749732No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4920.10539100706248274No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG4790.10260628533115697No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4770.1021778666032607No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)