FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007925443

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925443
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences434073
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT19680.45337996143505815No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12800.29488127573011913No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12000.2764511959969867No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT10470.2412036685073709No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA10270.23659614857408778No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT9040.20825990098439665No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5950.13707371801517257No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5830.1343092060552027No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA5780.1331573260718819No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG4990.11495762233541362No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT4970.11449687034208532No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT4870.11219311037544376No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT4730.10896784642214559No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG4440.10228694251888508No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)