FastQCFastQC Report
Sun 21 May 2023
EGAF00007925444

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925444
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences434073
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG58861.3559931163652197No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT28300.6519640705595603No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19780.4556837214016997No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10650.24535043644732568No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC10190.2347531406007745No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG9180.21148516493769481No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6250.14398499791509722No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6210.14306349392844062No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG5870.13523071004185933No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5480.12624604617195725No Hit
ATGGCATCCACCACCCCGATCACCATGGAAG5410.12463341419530817No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5300.12209927823200245No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC4860.1119627343787796No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA4850.11173235838211545No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4570.1052818304755191No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4350.10021355854890766No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)