FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925445

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925445
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470320
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT21710.46160061234903893No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA14840.3155298520156489No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA14070.2991580200714407No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT11790.250680387821058No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA11320.24068719169926858No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT10680.22707943527810853No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6390.13586494301752No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6170.13118727674774622No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA6150.13076203435958497No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5800.12332029256676305No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT5670.12055621704371491No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT5610.11928048987923116No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5330.11332709644497363No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)