FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007925447

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925447
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences437605
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT19660.4492636053061551No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13620.31123958821311454No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA11770.26896402006375614No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT10790.2465693947738257No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA10410.2378857645593629No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT9940.22714548508357993No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6230.14236583220027194No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6000.13710995075467602No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5460.12477005518675517No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA5460.12477005518675517No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT5300.12111378983329715No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT5040.11517235863392787No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG4950.1131157093726077No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT4870.1112875766958787No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)