FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007925448

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925448
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences437605
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG61191.3982929811131042No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT30060.6869208532809269No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19970.45634761942848No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11010.2515967596348305No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC10460.23902834748231852No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG9810.2241747694838953No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6540.14944984632259686No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6390.14602209755372994No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5690.1300259366323511No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA5520.12614115469430193No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG5520.12614115469430193No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5450.12454153860216406No Hit
ATGGCATCCACCACCCCGATCACCATGGAAG5360.12248488934084392No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC5330.12179933958707052No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5020.11471532546474561No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)