FastQCFastQC Report
Wed 31 May 2023
EGAF00007925454

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925454
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences475699
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28130.5913403223466941No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT27530.5787273044509238No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13490.2835826856899005No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG12260.25772599900357157No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7650.16081597817107035No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7170.15072556385445418No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6950.1461007906260051No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6580.13832276292361348No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6410.13474907451981188No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5460.11477846285150904No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5260.11057412355291896No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5210.10952303872827146No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4860.10216544495573882No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)