FastQCFastQC Report
Sun 21 May 2023
EGAF00007925455

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925455
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences437544
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14280.3263671767867917No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG11070.253003126542702No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8970.20500795348582088No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG8450.19312343444316457No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG6870.1570127804289397No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG6820.1558700382132997No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6790.15518439288391567No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC6530.14924213336258751No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA6470.1478708427038195No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6310.14421406761377142No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG5960.13621487210429123No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5840.13347229078675515No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5800.13255809701424315No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG5720.1307297094692191No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG5680.12981551569670707No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG5400.12341615928912293No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5340.1220448686303549No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA4990.1140456731208747No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG4430.10124696030570639No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)