FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925456

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925456
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences437544
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG65391.4944782696140275No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14580.3332236300806319No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11890.2717440988791984No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10630.24294699504506972No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10060.22991973378677344No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8980.20523650192894885No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8860.20249392061141278No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC7750.17712504342420418No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7230.1652405243815479No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG7070.16158374929149982No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6990.15975536174647578No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6580.15038487557822755No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC6540.14947068180571554No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6510.1487850364763315No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG6460.1476422942606915No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6370.14558535827253943No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6030.13781471120618727No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5780.13210100012798712No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5620.12844422503793904No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5350.1222734170734829No Hit

[OK]Adapter Content

Adapter graph