FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925458

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925458
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences504270
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28940.5738989033652606No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT27280.5409800305391952No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG16150.320264937434311No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16130.31986832450869573No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11600.23003549685684258No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11410.22626767406349774No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC10220.2026692049893906No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT9890.19612509171673906No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9330.18501992979951218No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA9110.18065718761774446No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT8160.1618180736510203No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT8050.15963670256013643No Hit
ATGTCCAACATGGACATCGATGGTATTAACA7760.15388581513871535No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7690.15249766989906202No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7340.1455569437007952No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6690.13266702361829974No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6560.13008903960180063No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6290.12473476510599481No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5430.10768040930453923No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC5360.10629226406488589No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5300.10510242528804013No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG5120.10153290895750292No Hit

[OK]Adapter Content

Adapter graph