FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007925463

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925463
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences467061
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC15590.3337893765482453No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT11750.25157313498665057No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG10790.2310190745962519No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG10760.23037676020905193No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA10670.22844981704745207No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9660.2068252326783868No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG8400.1798480284159885No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6960.14901693783039047No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6180.13231676376319151No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5540.11861405683625907No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5300.11347554173865941No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT4800.10277030195199344No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)