FastQCFastQC Report
Sun 21 May 2023
EGAF00007925464

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925464
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences467061
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28300.6059165719252946No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19200.41108120780797375No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12290.26313479395624984No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG11740.25135903019091727No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11540.24707693427625088No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG10900.2333742273493184No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10580.22652287388585218No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10060.21538942450771956No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG8440.18070444759892176No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7540.161435015982923No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6660.14259379395839086No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6090.13038982060159165No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5530.11839995204052575No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5150.11026396980265961No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5020.10748060745812646No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4890.10469724511359331No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC4720.10105746358612686No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)