FastQCFastQC Report
Wed 31 May 2023
EGAF00007925465

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925465
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470082
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC14840.31568960309052463No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT11850.2520836790177033No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG11650.247829102156645No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA10950.23293808314294104No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG10830.23038533702630604No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9770.20783607966269715No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG7570.16103573419105605No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7300.15529205542862734No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6100.12976459426227765No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5870.12487183087206062No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5040.10721533689866874No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA4970.10572623499729836No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA4920.10466259078203378No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)