FastQCFastQC Report
Wed 31 May 2023
EGAF00007925466

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925466
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470082
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29020.6173391025395569No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18910.4022702422130607No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG12640.2688892576188835No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12220.2599546462106611No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12210.2597419173676082No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11050.23506537157347013No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG10710.2278325909096711No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10490.22315255636250697No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7980.1697576167562255No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG7600.16167392072021478No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6690.14231559600239957No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6360.1352955441816534No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5410.11508630409162657No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5330.11338447334720327No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5000.10636442152645709No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC4970.10572623499729836No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4930.10487531962508669No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4790.10189711582234588No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)