FastQCFastQC Report
Wed 31 May 2023
EGAF00007925467

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925467
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences435764
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC14280.3277003148493221No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG10560.24233300593899448No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG10280.23590750956939996No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT10100.23177683333180346No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA10060.23085890527900424No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9070.2081401859722235No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG7290.16729238762265813No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6450.14801589851387448No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5540.1271330353126922No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5180.11887168283749919No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA4470.10257845990031302No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT4380.10051312178151477No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)