FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925468

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925468
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences435764
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG61721.416362985469199No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17520.40205248712605907No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11340.2602326029685793No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG10590.2430214519785939No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG10430.239349739767397No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9980.2290230491734058No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9910.22741667508100716No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9390.21548361039461728No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG7220.1656860135302595No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6910.15857207112106553No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6170.14159040214427993No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5520.12667407128629257No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5020.1151999706263023No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4720.10831551023030815No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC4570.10487328003231107No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4540.10418483399271165No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)