FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007925476

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925476
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences490711
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28450.579770985366132No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG18450.37598505026380086No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG18150.36987147221073097No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG16820.3427679428421209No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15760.32116663372127385No Hit
TCTGCCTGCAACGATTTCAGCGTTCGTATGC15630.31851741656494353No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG13750.28020566076570524No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG13010.26512550156813275No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG8300.16914232613493482No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7160.14591072953326906No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG6330.12899649691977558No Hit
GTTGTTCCGCCGGGTGCCCCGGCAACTTGCG5690.11595419707322639No Hit
CTGCCGCAGTCTCCAGGCCCAGCGTTCCCGC5240.1067838299936215No Hit
GATGGCGAACACCTGGAAGGTGGCGACGGCA5150.10494975657770053No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG5060.10311568316177953No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC4940.10067025194055157No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4940.10067025194055157No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)