FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925478

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925478
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences454902
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG61281.3471033321462644No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG16690.36689220975067155No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG16510.3629353135400592No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG14850.32644393737552263No Hit
TCTGCCTGCAACGATTTCAGCGTTCGTATGC14380.31611204171447915No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14370.3158922141472229No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG12190.2679698044853617No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG11410.2508232542393746No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG7340.16135343436608324No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7190.15805602085723958No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG5330.11716809334757815No Hit
GTTGTTCCGCCGGGTGCCCCGGCAACTTGCG5030.11057326632989083No Hit
CTGCCGCAGTCTCCAGGCCCAGCGTTCCCGC5010.11013361119537836No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC4900.10771550795555965No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4860.10683619768653467No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG4550.10002154310159111No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)