FastQCFastQC Report
Sun 21 May 2023
EGAF00007925480

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925480
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences460172
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG62921.3673148301070035No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG17770.3861599575810784No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG16930.36790591344106116No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG15320.3329189955060282No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14960.3250958337317351No Hit
TCTGCCTGCAACGATTTCAGCGTTCGTATGC13650.29662821727527966No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG13100.28467616456455413No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG11050.24012760446094067No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG7200.1564632354858618No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7050.153203584746573No Hit
GTTGTTCCGCCGGGTGCCCCGGCAACTTGCG5490.11930321705796963No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG5280.11473970602296532No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG4840.10517806385438488No Hit
GATGGCGAACACCTGGAAGGTGGCGACGGCA4690.1019184131150961No Hit
CTGCCGCAGTCTCCAGGCCCAGCGTTCCCGC4640.10083186286866651No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)