FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925485

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925485
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences417587
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12440.29790199407548607No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8180.19588732407857523No Hit
GATACGCGGTACACGAGGTTCGCGCGGGGAACGTGGCACACGCG7140.17098233422017448No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6960.1666718552062205No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG6720.16092454985428187No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6460.15469830238968166No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG4710.11279086753179578No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT4440.1063251490108648No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)