FastQCFastQC Report
Wed 31 May 2023
EGAF00007925486

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925486
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences417587
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44351.062054134826994No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18540.4439793384372598No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12580.30125458886411693No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA8680.20786087689511407No Hit
CTGCGTGTCTGCGCTGCGCTGTCCATCCCGA7350.17601122640312078No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7170.1717007473891668No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6700.1604456077416203No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA4820.11542504915143433No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC4210.10081731471525694No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)