FastQCFastQC Report
Wed 31 May 2023
EGAF00007925487

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925487
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences439845
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14910.3389830508474576No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8410.1912037194920938No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG7460.16960520183246372No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7100.16142050040355124No Hit
GATACGCGGTACACGAGGTTCGCGCGGGGAACGTGGCACACGCG7000.15914697222885335No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6360.14459639191078674No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG4900.11140288056019733No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)