FastQCFastQC Report
Wed 31 May 2023
EGAF00007925489

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925489
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences424810
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13740.32343871377792427No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7950.187142487229585No Hit
GATACGCGGTACACGAGGTTCGCGCGGGGAACGTGGCACACGCG6980.16430874979402554No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6860.16148395753395636No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6750.1588945646288929No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG6500.15300958075374874No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG4890.1151102845978202No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT4480.10545891104258374No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)