FastQCFastQC Report
Wed 31 May 2023
EGAF00007925494

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925494
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences485802
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24170.4975277993915217No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA17630.36290505185240074No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC16980.34952511517037804No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC13050.2686279595390715No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC10210.21016792849761837No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC9520.19596461109670196No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG9060.18649573282942433No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC8460.17414502204601875No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8330.1714690347096142No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG7690.1582949432073149No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7060.14532669688473904No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7050.14512085170501562No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6700.1379162704146957No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6330.13029999876492893No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC6000.12350710783405586No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC5980.123095417474609No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5850.12041943013820446No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG5760.11856682352069361No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT5730.11794928798152333No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5470.11259731330871425No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5460.11239146812899084No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5250.10806871935479886No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5100.10498104165894748No Hit

[OK]Adapter Content

Adapter graph