FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925498

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925498
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences471900
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG48821.034541216359398No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA17090.36215299851663485No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC15790.3346047891502437No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC13340.2826870099597372No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC9480.20089001907183726No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC9440.20004238186056367No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG8590.18203009112100021No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC8130.1722822631913541No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7850.16634880271243907No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG7010.148548421275694No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6800.14409832591650773No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6560.1390125026488663No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT5970.12650985378258103No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5930.12566221657130747No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5900.1250264886628523No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5890.1248145793600339No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC5740.12163593981775801No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG5580.1182453909726637No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC5330.11294765840220386No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5280.11188811188811189No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5170.10955710955710955No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4890.10362364907819453No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)