FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925501

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925501
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences437743
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA21610.4936686594645716No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA20000.4568890878894694No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA13280.3033743543586077No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT12070.27573256454129474No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC9160.20925520225337696No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5950.13592450364711714No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5510.12587294371354882No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT5450.1245022764498804No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5030.11490760560420156No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)