FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007925512

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925512
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences437661
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT33680.769545378729199No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22630.5170668622518342No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15390.3516420243064838No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12940.29566262472552957No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG10580.24173961125163085No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7770.17753466724245479No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7530.17205097095697355No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7240.1654248379453504No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6090.1391487932440862No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5810.1327511475776914No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5450.12452560314946956No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4790.10944543836439617No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)