FastQCFastQC Report
Wed 31 May 2023
EGAF00007925518

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925518
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences438963
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT37850.8622594615035891No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21770.4959415713852876No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15810.3601670300230315No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10320.23509954141920844No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10290.234416112519734No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG7920.180425229461253No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7020.1599223624770197No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6680.15217683494964268No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6670.15194902531648452No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6510.14830407118595418No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6240.14215321109068418No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6100.1389638762264701No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5820.13258520649804198No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG5710.13007930053330236No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5660.1289402523675116No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5410.12324501153855794No Hit
CCGCTGATTCGTCACGAAAACCGTATGGTTC4840.1102598624485435No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4770.10866519501643646No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG4470.10183090602169205No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)