FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925522

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925522
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences424906
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43171.015989418836166No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT36030.8479522529688919No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA14540.34219333217229225No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11140.2621756341402569No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10280.2419358634615656No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG7750.18239328227890403No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7010.16497766564840222No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6660.15674054967451623No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6630.1560345111624689No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6630.1560345111624689No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6020.14167839475083902No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5750.1353240481424127No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5560.130852470899446No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG5350.1259102013151144No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5320.12520416280306704No Hit
CCGCTGATTCGTCACGAAAACCGTATGGTTC5080.11955585470668807No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4930.11602566214645121No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4770.1122601234155319No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG4270.10049281488140906No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)