FastQCFastQC Report
Sun 21 May 2023
EGAF00007925523

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925523
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences413468
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18830.45541613861290353No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT10070.2435496822003154No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9840.23798697843605793No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8610.20823860613155068No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7980.19300163495119332No Hit
CAGGTCGTTCAGGATATCGTTCAGATCATCGTCGCCGACAGAGT7980.19300163495119332No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6000.14511401124149872No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5650.1366490272524113No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5080.12286319618446893No Hit
GCCGATGCCGGTACCGATGTTCTGTTTGTTCTGTGCTTTCTGCT4770.11536563893699149No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG4350.10520765815008658No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC4260.1030309479814641No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT4200.10157980786904912No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)