FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925524

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925524
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences413468
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT22410.5420008319869978No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21690.5245871506380179No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18830.45541613861290353No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10910.2638656437741252No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10350.2503216693915853No Hit
GCAGCACAGGCTGACAAAATTGGTGATGATC8530.20630375264833073No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6710.1622858359050761No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6320.15285342517437867No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5580.1349560304545938No Hit
ATGGGTTACGGCCTGCTGGACATTGCAAACC5140.12431433629688392No Hit
ATGGGTACCGCTGCACTGGGCGGCGCGGCCG4600.11125407528514904No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4540.10980293517273405No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4300.1039983747230741No Hit
AGCAACACCACTACCATGCACACCTCTTATC4200.10157980786904912No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA4190.10133795118364662No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4190.10133795118364662No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)