FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007925525

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925525
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences412521
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18730.45403749142467903No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA10390.25186596561144764No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9350.22665512786015746No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8450.2048380567292332No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7880.1910205783463145No Hit
CAGGTCGTTCAGGATATCGTTCAGATCATCGTCGCCGACAGAGT7570.18350580940121836No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6270.15199226221210554No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5630.13647790051900388No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC5100.12363006974190406No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT4940.11975147931862862No Hit
GCCGATGCCGGTACCGATGTTCTGTTTGTTCTGTGCTTTCTGCT4690.11369118178226079No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT4650.11272153417644193No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG4470.10835811995025708No Hit
GCTATCGCCTGCATCACCCATGATATCGTCAGCGCTACGAGAAG4390.10641882473861938No Hit
GTTACCCAGCAGGGTACCGTTACCCAGCAGGTAGTCGACCGGGC4300.10423711762552693No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG4190.10157058670952508No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)