FastQCFastQC Report
Wed 31 May 2023
EGAF00007925526

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925526
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences412521
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24150.5854247420131339No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG19180.46494602699014115No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19110.46324914367995806No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10420.2525932013158118No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9800.23756366342561952No Hit
GCAGCACAGGCTGACAAAATTGGTGATGATC8140.19732328778413705No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6720.1629007977775677No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6360.154173969325198No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5660.13720513622336802No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA5210.1262966006579059No Hit
ATGGGTTACGGCCTGCTGGACATTGCAAACC4940.11975147931862862No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4780.1158728888953532No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4730.11466082938807963No Hit
ATGGGTACCGCTGCACTGGGCGGCGCGGCCG4630.1122367103735325No Hit
AGCAACACCACTACCATGCACACCTCTTATC4560.1105398270633495No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4310.10447952952698164No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)