FastQCFastQC Report
Wed 31 May 2023
EGAF00007925527

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925527
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences397444
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17910.4506295226497318No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9560.2405370316321293No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9010.22669860408007164No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8980.2259437807590503No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7260.18266724368716095No Hit
CAGGTCGTTCAGGATATCGTTCAGATCATCGTCGCCGACAGAGT7120.1791447348557281No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6020.1514678797516128No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5550.13964231438894537No Hit
GCCGATGCCGGTACCGATGTTCTGTTTGTTCTGTGCTTTCTGCT4670.11750083030565311No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT4580.11523636034258915No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG4400.11070742041646119No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC4340.10919777377441853No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT4130.10391401052726926No Hit
GTTACCCAGCAGGGTACCGTTACCCAGCAGGTAGTCGACCGGGC3980.10013989392216262No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)