FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007925528

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925528
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences397444
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG38640.9722124374754683No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT22380.5630981974819094No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18050.4541520314811647No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9900.24909169593703767No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9400.2365113072533489No Hit
GCAGCACAGGCTGACAAAATTGGTGATGATC7760.19524763237084974No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6360.16002254405652117No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6160.15499038858304565No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5210.131087650084037No Hit
ATGGGTTACGGCCTGCTGGACATTGCAAACC4880.12278459355280241No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4460.11221706705850384No Hit
ATGGGTACCGCTGCACTGGGCGGCGCGGCCG4370.10995259709543985No Hit
AGCAACACCACTACCATGCACACCTCTTATC4360.10970098932176608No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA4340.10919777377441853No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4180.10517204939563814No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4090.10290757943257414No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)