FastQCFastQC Report
Sun 21 May 2023
EGAF00007925530

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925530
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences493007
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41750.8468439596192346No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15240.30912339987059007No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7080.14360850860129776No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6020.12210779968641419No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA5570.11298014024141645No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5220.10588084956197376No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5020.10182411203086365No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)