FastQCFastQC Report
Wed 31 May 2023
EGAF00007925538

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925538
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences526411
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT58761.1162380725326788No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45270.8599744306254998No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC28640.5440615792603118No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG21760.4133652222312984No Hit
CGTTCTCGCCACGAGAACACCTCTCAGGTTC19920.37841154535144594No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14630.2779197243218702No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG14170.2691813051019071No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13250.2517044666619808No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12940.2458155319702666No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC12710.24144632236028502No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10950.20801237056216532No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG9340.17742790329229444No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG9070.1722988311414465No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG9010.17115903733014698No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8940.16982927788363084No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC8110.15406213016065393No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8040.1527323707141378No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7800.14817319546893967No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7790.14798322983372308No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC7740.14703340165764012No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7610.14456384839982447No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT7540.14323408895330836No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7140.13563546354464479No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7130.1354454979094282No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7050.13392577282769547No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC6980.13259601338117935No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6810.12936659758249733No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6710.12746694123033142No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6690.12708700995989827No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6520.12385759416121624No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6490.12328769725556646No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG5690.10809044643823931No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5420.10296137428739141No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5370.10201154611130846No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5300.10068178666479234No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)