FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007925543

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925543
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences507031
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13380.26388919020730484No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8180.16133135843764976No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6850.1351002206965649No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6820.13450854089789382No Hit
GATACGCGGTACACGAGGTTCGCGCGGGGAACGTGGCACACGCG5790.11419420114351983No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG5310.10472732436478244No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)