FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925547

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925547
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences558199
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG26570.4759951200199212No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC16580.29702668761499035No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT15560.2787536344565289No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC12110.21694771936173302No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11810.21157329196218552No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT11790.2112149968022157No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA11740.2103192589022911No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9720.17413144774533815No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG9370.16786128244586607No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT8640.15478350910696723No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8270.14815504864752535No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT8180.14654272042766112No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8040.14403465430787227No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT7890.14134744060809856No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7380.13221091402886784No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG7190.12880711000915446No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT7160.1282696672691997No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6490.11626677941021034No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC5890.1055179246111154No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5800.10390559639125116No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5770.10336815365129641No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)